How to apply resample on data frame column containing array
I have a pandas dataframe with columns run, type, vectime and vecvalue.
For rows (probably not the correct term here) with type=="vector" the vectime and vecvalue contains arrays:
loaded_csv.tail(2)
run type module name attrname attrvalue value vectime vecvalue
709 run-id1 vector client499.app[0] packetReceived:vector(packetBytes) NaN None NaN [20.02926688, 20.04433504, 20.04556544, 20.059... [1460.0, 1460.0, 1460.0, 1460.0, 1460.0, 1460....
710 run-id1 attr client499.app[0] packetReceived:vector(packetBytes) checkSignals False NaN None None
The 'vectime' contains time points for the values in 'vecvalue'.
I have manged to run simple things such as apply min() max() to the array and assigning the value to the original dataframe by running:
loaded_csv.loc[(loaded_csv.type == "vector"),('min_vectime')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime')].apply(min)
Which in my understanding 'filters' rows with type == vector and adds new column 'min_vectime' with the appropriate value.
However I am unable to figure out how to do similar thing with resample on 'vecvalue' using 'vectime' as index and replacing the original values (with the resampled ones) or adding new columns.
I found a way how to achieve part of it by getting the data from the dataframe, create Series and apply the resample.
for row in loaded_csv[loaded_csv.type == "vector"].itertuples():
print_series = pd.Series(row.vecvalue, index = pd.to_timedelta(row.vectime, unit='s'))
result = print_series.resample('10ms',label='right').sum()*8
resultPlot = result.rolling( window=30, min_periods=10).mean()
I am looking for a cleaner and less complicated way.
There are many examples on each of these tasks - slicing dataframe, applying function whether using .resample directly or via .apply() but on a simpler/different dataframe structure and I get lost somewhere in between.
Partial solution
I found a way how to turn the arrays into Series and resample it but when I try to insert back to the dataframe as a new column I get only NaN.
I had wrap it in pd.Dataframe() to get it included in the resulting Dataframe.
But now I have a column with Dataframe [Series] instead of just Series.
loaded_csv.loc[(loaded_csv.type == "vector"),('resampled')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime', 'vecvalue')].apply(lambda x: pd.DataFrame(pd.Series(x.vecvalue, index = (pd.to_timedelta(x.vectime, unit='s')))), axis= 1)
loaded_csv.loc[(loaded_csv3.type == "vector"),('resampled')].head()
76 0
00:00:20.029266 1460....
157 0
Name: resampled, dtype: object
python pandas
add a comment |
I have a pandas dataframe with columns run, type, vectime and vecvalue.
For rows (probably not the correct term here) with type=="vector" the vectime and vecvalue contains arrays:
loaded_csv.tail(2)
run type module name attrname attrvalue value vectime vecvalue
709 run-id1 vector client499.app[0] packetReceived:vector(packetBytes) NaN None NaN [20.02926688, 20.04433504, 20.04556544, 20.059... [1460.0, 1460.0, 1460.0, 1460.0, 1460.0, 1460....
710 run-id1 attr client499.app[0] packetReceived:vector(packetBytes) checkSignals False NaN None None
The 'vectime' contains time points for the values in 'vecvalue'.
I have manged to run simple things such as apply min() max() to the array and assigning the value to the original dataframe by running:
loaded_csv.loc[(loaded_csv.type == "vector"),('min_vectime')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime')].apply(min)
Which in my understanding 'filters' rows with type == vector and adds new column 'min_vectime' with the appropriate value.
However I am unable to figure out how to do similar thing with resample on 'vecvalue' using 'vectime' as index and replacing the original values (with the resampled ones) or adding new columns.
I found a way how to achieve part of it by getting the data from the dataframe, create Series and apply the resample.
for row in loaded_csv[loaded_csv.type == "vector"].itertuples():
print_series = pd.Series(row.vecvalue, index = pd.to_timedelta(row.vectime, unit='s'))
result = print_series.resample('10ms',label='right').sum()*8
resultPlot = result.rolling( window=30, min_periods=10).mean()
I am looking for a cleaner and less complicated way.
There are many examples on each of these tasks - slicing dataframe, applying function whether using .resample directly or via .apply() but on a simpler/different dataframe structure and I get lost somewhere in between.
Partial solution
I found a way how to turn the arrays into Series and resample it but when I try to insert back to the dataframe as a new column I get only NaN.
I had wrap it in pd.Dataframe() to get it included in the resulting Dataframe.
But now I have a column with Dataframe [Series] instead of just Series.
loaded_csv.loc[(loaded_csv.type == "vector"),('resampled')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime', 'vecvalue')].apply(lambda x: pd.DataFrame(pd.Series(x.vecvalue, index = (pd.to_timedelta(x.vectime, unit='s')))), axis= 1)
loaded_csv.loc[(loaded_csv3.type == "vector"),('resampled')].head()
76 0
00:00:20.029266 1460....
157 0
Name: resampled, dtype: object
python pandas
add a comment |
I have a pandas dataframe with columns run, type, vectime and vecvalue.
For rows (probably not the correct term here) with type=="vector" the vectime and vecvalue contains arrays:
loaded_csv.tail(2)
run type module name attrname attrvalue value vectime vecvalue
709 run-id1 vector client499.app[0] packetReceived:vector(packetBytes) NaN None NaN [20.02926688, 20.04433504, 20.04556544, 20.059... [1460.0, 1460.0, 1460.0, 1460.0, 1460.0, 1460....
710 run-id1 attr client499.app[0] packetReceived:vector(packetBytes) checkSignals False NaN None None
The 'vectime' contains time points for the values in 'vecvalue'.
I have manged to run simple things such as apply min() max() to the array and assigning the value to the original dataframe by running:
loaded_csv.loc[(loaded_csv.type == "vector"),('min_vectime')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime')].apply(min)
Which in my understanding 'filters' rows with type == vector and adds new column 'min_vectime' with the appropriate value.
However I am unable to figure out how to do similar thing with resample on 'vecvalue' using 'vectime' as index and replacing the original values (with the resampled ones) or adding new columns.
I found a way how to achieve part of it by getting the data from the dataframe, create Series and apply the resample.
for row in loaded_csv[loaded_csv.type == "vector"].itertuples():
print_series = pd.Series(row.vecvalue, index = pd.to_timedelta(row.vectime, unit='s'))
result = print_series.resample('10ms',label='right').sum()*8
resultPlot = result.rolling( window=30, min_periods=10).mean()
I am looking for a cleaner and less complicated way.
There are many examples on each of these tasks - slicing dataframe, applying function whether using .resample directly or via .apply() but on a simpler/different dataframe structure and I get lost somewhere in between.
Partial solution
I found a way how to turn the arrays into Series and resample it but when I try to insert back to the dataframe as a new column I get only NaN.
I had wrap it in pd.Dataframe() to get it included in the resulting Dataframe.
But now I have a column with Dataframe [Series] instead of just Series.
loaded_csv.loc[(loaded_csv.type == "vector"),('resampled')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime', 'vecvalue')].apply(lambda x: pd.DataFrame(pd.Series(x.vecvalue, index = (pd.to_timedelta(x.vectime, unit='s')))), axis= 1)
loaded_csv.loc[(loaded_csv3.type == "vector"),('resampled')].head()
76 0
00:00:20.029266 1460....
157 0
Name: resampled, dtype: object
python pandas
I have a pandas dataframe with columns run, type, vectime and vecvalue.
For rows (probably not the correct term here) with type=="vector" the vectime and vecvalue contains arrays:
loaded_csv.tail(2)
run type module name attrname attrvalue value vectime vecvalue
709 run-id1 vector client499.app[0] packetReceived:vector(packetBytes) NaN None NaN [20.02926688, 20.04433504, 20.04556544, 20.059... [1460.0, 1460.0, 1460.0, 1460.0, 1460.0, 1460....
710 run-id1 attr client499.app[0] packetReceived:vector(packetBytes) checkSignals False NaN None None
The 'vectime' contains time points for the values in 'vecvalue'.
I have manged to run simple things such as apply min() max() to the array and assigning the value to the original dataframe by running:
loaded_csv.loc[(loaded_csv.type == "vector"),('min_vectime')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime')].apply(min)
Which in my understanding 'filters' rows with type == vector and adds new column 'min_vectime' with the appropriate value.
However I am unable to figure out how to do similar thing with resample on 'vecvalue' using 'vectime' as index and replacing the original values (with the resampled ones) or adding new columns.
I found a way how to achieve part of it by getting the data from the dataframe, create Series and apply the resample.
for row in loaded_csv[loaded_csv.type == "vector"].itertuples():
print_series = pd.Series(row.vecvalue, index = pd.to_timedelta(row.vectime, unit='s'))
result = print_series.resample('10ms',label='right').sum()*8
resultPlot = result.rolling( window=30, min_periods=10).mean()
I am looking for a cleaner and less complicated way.
There are many examples on each of these tasks - slicing dataframe, applying function whether using .resample directly or via .apply() but on a simpler/different dataframe structure and I get lost somewhere in between.
Partial solution
I found a way how to turn the arrays into Series and resample it but when I try to insert back to the dataframe as a new column I get only NaN.
I had wrap it in pd.Dataframe() to get it included in the resulting Dataframe.
But now I have a column with Dataframe [Series] instead of just Series.
loaded_csv.loc[(loaded_csv.type == "vector"),('resampled')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime', 'vecvalue')].apply(lambda x: pd.DataFrame(pd.Series(x.vecvalue, index = (pd.to_timedelta(x.vectime, unit='s')))), axis= 1)
loaded_csv.loc[(loaded_csv3.type == "vector"),('resampled')].head()
76 0
00:00:20.029266 1460....
157 0
Name: resampled, dtype: object
python pandas
python pandas
edited Nov 22 '18 at 21:24
badluck
asked Nov 21 '18 at 17:35
badluckbadluck
12
12
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