How to apply resample on data frame column containing array












0















I have a pandas dataframe with columns run, type, vectime and vecvalue.
For rows (probably not the correct term here) with type=="vector" the vectime and vecvalue contains arrays:



loaded_csv.tail(2)

run type module name attrname attrvalue value vectime vecvalue
709 run-id1 vector client499.app[0] packetReceived:vector(packetBytes) NaN None NaN [20.02926688, 20.04433504, 20.04556544, 20.059... [1460.0, 1460.0, 1460.0, 1460.0, 1460.0, 1460....
710 run-id1 attr client499.app[0] packetReceived:vector(packetBytes) checkSignals False NaN None None


The 'vectime' contains time points for the values in 'vecvalue'.



I have manged to run simple things such as apply min() max() to the array and assigning the value to the original dataframe by running:



loaded_csv.loc[(loaded_csv.type == "vector"),('min_vectime')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime')].apply(min)


Which in my understanding 'filters' rows with type == vector and adds new column 'min_vectime' with the appropriate value.



However I am unable to figure out how to do similar thing with resample on 'vecvalue' using 'vectime' as index and replacing the original values (with the resampled ones) or adding new columns.



I found a way how to achieve part of it by getting the data from the dataframe, create Series and apply the resample.



for row in loaded_csv[loaded_csv.type == "vector"].itertuples():
print_series = pd.Series(row.vecvalue, index = pd.to_timedelta(row.vectime, unit='s'))
result = print_series.resample('10ms',label='right').sum()*8
resultPlot = result.rolling( window=30, min_periods=10).mean()


I am looking for a cleaner and less complicated way.



There are many examples on each of these tasks - slicing dataframe, applying function whether using .resample directly or via .apply() but on a simpler/different dataframe structure and I get lost somewhere in between.



Partial solution



I found a way how to turn the arrays into Series and resample it but when I try to insert back to the dataframe as a new column I get only NaN.
I had wrap it in pd.Dataframe() to get it included in the resulting Dataframe.
But now I have a column with Dataframe [Series] instead of just Series.



loaded_csv.loc[(loaded_csv.type == "vector"),('resampled')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime', 'vecvalue')].apply(lambda x:  pd.DataFrame(pd.Series(x.vecvalue, index = (pd.to_timedelta(x.vectime, unit='s')))), axis= 1)
loaded_csv.loc[(loaded_csv3.type == "vector"),('resampled')].head()

76 0
00:00:20.029266 1460....
157 0
Name: resampled, dtype: object









share|improve this question





























    0















    I have a pandas dataframe with columns run, type, vectime and vecvalue.
    For rows (probably not the correct term here) with type=="vector" the vectime and vecvalue contains arrays:



    loaded_csv.tail(2)

    run type module name attrname attrvalue value vectime vecvalue
    709 run-id1 vector client499.app[0] packetReceived:vector(packetBytes) NaN None NaN [20.02926688, 20.04433504, 20.04556544, 20.059... [1460.0, 1460.0, 1460.0, 1460.0, 1460.0, 1460....
    710 run-id1 attr client499.app[0] packetReceived:vector(packetBytes) checkSignals False NaN None None


    The 'vectime' contains time points for the values in 'vecvalue'.



    I have manged to run simple things such as apply min() max() to the array and assigning the value to the original dataframe by running:



    loaded_csv.loc[(loaded_csv.type == "vector"),('min_vectime')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime')].apply(min)


    Which in my understanding 'filters' rows with type == vector and adds new column 'min_vectime' with the appropriate value.



    However I am unable to figure out how to do similar thing with resample on 'vecvalue' using 'vectime' as index and replacing the original values (with the resampled ones) or adding new columns.



    I found a way how to achieve part of it by getting the data from the dataframe, create Series and apply the resample.



    for row in loaded_csv[loaded_csv.type == "vector"].itertuples():
    print_series = pd.Series(row.vecvalue, index = pd.to_timedelta(row.vectime, unit='s'))
    result = print_series.resample('10ms',label='right').sum()*8
    resultPlot = result.rolling( window=30, min_periods=10).mean()


    I am looking for a cleaner and less complicated way.



    There are many examples on each of these tasks - slicing dataframe, applying function whether using .resample directly or via .apply() but on a simpler/different dataframe structure and I get lost somewhere in between.



    Partial solution



    I found a way how to turn the arrays into Series and resample it but when I try to insert back to the dataframe as a new column I get only NaN.
    I had wrap it in pd.Dataframe() to get it included in the resulting Dataframe.
    But now I have a column with Dataframe [Series] instead of just Series.



    loaded_csv.loc[(loaded_csv.type == "vector"),('resampled')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime', 'vecvalue')].apply(lambda x:  pd.DataFrame(pd.Series(x.vecvalue, index = (pd.to_timedelta(x.vectime, unit='s')))), axis= 1)
    loaded_csv.loc[(loaded_csv3.type == "vector"),('resampled')].head()

    76 0
    00:00:20.029266 1460....
    157 0
    Name: resampled, dtype: object









    share|improve this question



























      0












      0








      0








      I have a pandas dataframe with columns run, type, vectime and vecvalue.
      For rows (probably not the correct term here) with type=="vector" the vectime and vecvalue contains arrays:



      loaded_csv.tail(2)

      run type module name attrname attrvalue value vectime vecvalue
      709 run-id1 vector client499.app[0] packetReceived:vector(packetBytes) NaN None NaN [20.02926688, 20.04433504, 20.04556544, 20.059... [1460.0, 1460.0, 1460.0, 1460.0, 1460.0, 1460....
      710 run-id1 attr client499.app[0] packetReceived:vector(packetBytes) checkSignals False NaN None None


      The 'vectime' contains time points for the values in 'vecvalue'.



      I have manged to run simple things such as apply min() max() to the array and assigning the value to the original dataframe by running:



      loaded_csv.loc[(loaded_csv.type == "vector"),('min_vectime')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime')].apply(min)


      Which in my understanding 'filters' rows with type == vector and adds new column 'min_vectime' with the appropriate value.



      However I am unable to figure out how to do similar thing with resample on 'vecvalue' using 'vectime' as index and replacing the original values (with the resampled ones) or adding new columns.



      I found a way how to achieve part of it by getting the data from the dataframe, create Series and apply the resample.



      for row in loaded_csv[loaded_csv.type == "vector"].itertuples():
      print_series = pd.Series(row.vecvalue, index = pd.to_timedelta(row.vectime, unit='s'))
      result = print_series.resample('10ms',label='right').sum()*8
      resultPlot = result.rolling( window=30, min_periods=10).mean()


      I am looking for a cleaner and less complicated way.



      There are many examples on each of these tasks - slicing dataframe, applying function whether using .resample directly or via .apply() but on a simpler/different dataframe structure and I get lost somewhere in between.



      Partial solution



      I found a way how to turn the arrays into Series and resample it but when I try to insert back to the dataframe as a new column I get only NaN.
      I had wrap it in pd.Dataframe() to get it included in the resulting Dataframe.
      But now I have a column with Dataframe [Series] instead of just Series.



      loaded_csv.loc[(loaded_csv.type == "vector"),('resampled')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime', 'vecvalue')].apply(lambda x:  pd.DataFrame(pd.Series(x.vecvalue, index = (pd.to_timedelta(x.vectime, unit='s')))), axis= 1)
      loaded_csv.loc[(loaded_csv3.type == "vector"),('resampled')].head()

      76 0
      00:00:20.029266 1460....
      157 0
      Name: resampled, dtype: object









      share|improve this question
















      I have a pandas dataframe with columns run, type, vectime and vecvalue.
      For rows (probably not the correct term here) with type=="vector" the vectime and vecvalue contains arrays:



      loaded_csv.tail(2)

      run type module name attrname attrvalue value vectime vecvalue
      709 run-id1 vector client499.app[0] packetReceived:vector(packetBytes) NaN None NaN [20.02926688, 20.04433504, 20.04556544, 20.059... [1460.0, 1460.0, 1460.0, 1460.0, 1460.0, 1460....
      710 run-id1 attr client499.app[0] packetReceived:vector(packetBytes) checkSignals False NaN None None


      The 'vectime' contains time points for the values in 'vecvalue'.



      I have manged to run simple things such as apply min() max() to the array and assigning the value to the original dataframe by running:



      loaded_csv.loc[(loaded_csv.type == "vector"),('min_vectime')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime')].apply(min)


      Which in my understanding 'filters' rows with type == vector and adds new column 'min_vectime' with the appropriate value.



      However I am unable to figure out how to do similar thing with resample on 'vecvalue' using 'vectime' as index and replacing the original values (with the resampled ones) or adding new columns.



      I found a way how to achieve part of it by getting the data from the dataframe, create Series and apply the resample.



      for row in loaded_csv[loaded_csv.type == "vector"].itertuples():
      print_series = pd.Series(row.vecvalue, index = pd.to_timedelta(row.vectime, unit='s'))
      result = print_series.resample('10ms',label='right').sum()*8
      resultPlot = result.rolling( window=30, min_periods=10).mean()


      I am looking for a cleaner and less complicated way.



      There are many examples on each of these tasks - slicing dataframe, applying function whether using .resample directly or via .apply() but on a simpler/different dataframe structure and I get lost somewhere in between.



      Partial solution



      I found a way how to turn the arrays into Series and resample it but when I try to insert back to the dataframe as a new column I get only NaN.
      I had wrap it in pd.Dataframe() to get it included in the resulting Dataframe.
      But now I have a column with Dataframe [Series] instead of just Series.



      loaded_csv.loc[(loaded_csv.type == "vector"),('resampled')] = loaded_csv.loc[(loaded_csv.type == "vector"),('vectime', 'vecvalue')].apply(lambda x:  pd.DataFrame(pd.Series(x.vecvalue, index = (pd.to_timedelta(x.vectime, unit='s')))), axis= 1)
      loaded_csv.loc[(loaded_csv3.type == "vector"),('resampled')].head()

      76 0
      00:00:20.029266 1460....
      157 0
      Name: resampled, dtype: object






      python pandas






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Nov 22 '18 at 21:24







      badluck

















      asked Nov 21 '18 at 17:35









      badluckbadluck

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