Cfrgtkky

I cant seem to install devtools package in R. I've tried the option with dependencies=True but that fails as well.

I've also tried installing 'ps' as per the error logs below, that seems to install fine. But when I try and install devtools after installing 'ps' it gives me the same error.

Can anyone advise as to how I can fix this?

> install.packages('devtools')

Installing package into ‘/home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2’

(as ‘lib’ is unspecified)

also installing the dependencies ‘processx’, ‘xopen’, ‘callr’, ‘pkgbuild’, ‘pkgload’, ‘rcmdcheck’



trying URL 'https://cran.rstudio.com/src/contrib/processx_3.2.0.tar.gz'

Content type 'application/x-gzip' length 97959 bytes (95 KB)

==================================================

downloaded 95 KB



trying URL 'https://cran.rstudio.com/src/contrib/xopen_1.0.0.tar.gz'

Content type 'application/x-gzip' length 11221 bytes (10 KB)

==================================================

downloaded 10 KB



trying URL 'https://cran.rstudio.com/src/contrib/callr_3.0.0.tar.gz'

Content type 'application/x-gzip' length 36365 bytes (35 KB)

==================================================

downloaded 35 KB



trying URL 'https://cran.rstudio.com/src/contrib/pkgbuild_1.0.2.tar.gz'

Content type 'application/x-gzip' length 25264 bytes (24 KB)

==================================================

downloaded 24 KB



trying URL 'https://cran.rstudio.com/src/contrib/pkgload_1.0.2.tar.gz'

Content type 'application/x-gzip' length 55605 bytes (54 KB)

==================================================

downloaded 54 KB



trying URL 'https://cran.rstudio.com/src/contrib/rcmdcheck_1.3.2.tar.gz'

Content type 'application/x-gzip' length 1408582 bytes (1.3 MB)

==================================================

downloaded 1.3 MB



trying URL 'https://cran.rstudio.com/src/contrib/devtools_2.0.1.tar.gz'

Content type 'application/x-gzip' length 388953 bytes (379 KB)

==================================================

downloaded 379 KB



* installing *source* package ‘processx’ ...

** package ‘processx’ successfully unpacked and MD5 sums checked

** libs

gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -Wall tools/px.c -o tools/px

gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  supervisor/supervisor.c supervisor/utils.c 

      -o supervisor/supervisor

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c init.c -o init.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c poll.c -o poll.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c processx-connection.c -o processx-connection.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c processx-vector.c -o processx-vector.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c create-time.c -o create-time.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c unix/childlist.c -o unix/childlist.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c unix/connection.c -o unix/connection.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c unix/processx.c -o unix/processx.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c unix/sigchld.c -o unix/sigchld.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c unix/utils.c -o unix/utils.o

gcc -I/usr/local/lib/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c unix/named_pipe.c -o unix/named_pipe.o

gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o processx-connection.o processx-vector.o create-time.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o -L/usr/local/lib/R/lib -lR

installing via 'install.libs.R' to /home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2/processx

** R

** inst

** preparing package for lazy loading

** help

*** installing help indices

** building package indices

** testing if installed package can be loaded

Error: package or namespace load failed for ‘processx’:

 .onLoad failed in loadNamespace() for 'processx', details:

  call: loadNamespace(name)

  error: there is no package called ‘ps’

Error: loading failed

Execution halted

ERROR: loading failed

* removing ‘/home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2/processx’

Warning in install.packages :

  installation of package ‘processx’ had non-zero exit status

ERROR: dependency ‘processx’ is not available for package ‘xopen’

* removing ‘/home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2/xopen’

Warning in install.packages :

  installation of package ‘xopen’ had non-zero exit status

ERROR: dependency ‘processx’ is not available for package ‘callr’

* removing ‘/home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2/callr’

Warning in install.packages :

  installation of package ‘callr’ had non-zero exit status

ERROR: dependency ‘callr’ is not available for package ‘pkgbuild’

* removing ‘/home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2/pkgbuild’

Warning in install.packages :

  installation of package ‘pkgbuild’ had non-zero exit status

ERROR: dependency ‘pkgbuild’ is not available for package ‘pkgload’

* removing ‘/home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2/pkgload’

Warning in install.packages :

  installation of package ‘pkgload’ had non-zero exit status

ERROR: dependencies ‘callr’, ‘pkgbuild’, ‘xopen’ are not available for package ‘rcmdcheck’

* removing ‘/home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2/rcmdcheck’

Warning in install.packages :

  installation of package ‘rcmdcheck’ had non-zero exit status

ERROR: dependencies ‘callr’, ‘pkgbuild’, ‘pkgload’, ‘rcmdcheck’ are not available for package ‘devtools’

* removing ‘/home/user/pq-tool/packrat/lib/x86_64-pc-linux-gnu/3.4.2/devtools’

Warning in install.packages :

  installation of package ‘devtools’ had non-zero exit status



The downloaded source packages are in

    ‘/tmp/RtmpvzJcng/downloaded_packages’