Can't run h2o.init() on server CentOS 7
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I m using h2o package from R on a server with CentOs 7.
I installed correctly library. Java version
java version "1.8.0_181"
Java(TM) SE Runtime Environment (build 1.8.0_181-b13)
Java HotSpot(TM) 64-Bit Server VM (build 25.181-b13, mixed mode)
Settled correctly as JAVA_HOME.
When I run h2o.init() I got this long message with error
rary: xgboost4j_gpu
11-22 10:42:12.375 127.0.0.1:54321 31865 main INFO: XGBoost supported backends: [WITH_GPU, WITH_OMP]
11-22 10:42:12.375 127.0.0.1:54321 31865 main INFO: ----- H2O started -----
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git branch: rel-wright
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git hash: 0457fda98594a72aca24d06e8c3622d45bd545d2
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git describe: jenkins-rel-latest-stable-1-g0457fda
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build project version: 3.20.0.8
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build age: 2 months
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Built by: 'jenkins'
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Built on: '2018-09-21 16:54:12'
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Watchdog Build git branch: (unknown)
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Watchdog Build git hash: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Build git describe: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Build project version: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Built by: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Built on: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git branch: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git hash: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git describe: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build project version: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: XGBoost Built by: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: XGBoost Built on: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git branch: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git hash: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git describe: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build project version: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Built by: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Built on: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: Processed H2O arguments: [-name, H2O_started_from_R_datascience_msi886, -ip, localhost, -web_ip, localhost, -port, 54321, -ice_root, /tmp/RtmpooR6rF]
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: Java availableProcessors: 4
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java heap totalMemory: 121.0 MB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java heap maxMemory: 1.73 GB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java version: Java 1.8.0_181 (from Oracle Corporation)
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: JVM launch parameters: [-Dsys.ai.h2o.debug.allowJavaVersions=11, -ea]
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: OS version: Linux 3.10.0-862.14.4.el7.x86_64 (amd64)
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Machine physical memory: 7.80 GB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: X-h2o-cluster-id: 1542879731843
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: User name: 'datascience'
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: IPv6 stack selected: false
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Possible IP Address: ens160 (ens160), fe80:0:0:0:250:56ff:feb4:1f23%ens160
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: ens160 (ens160), 10.0.1.110
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: lo (lo), 0:0:0:0:0:0:0:1%lo
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: lo (lo), 127.0.0.1
11-22 10:42:12.380 127.0.0.1:54321 31865 main FATAL: On localhost/127.0.0.1 some of the required ports 54321, 54322 are not available, change -port PORT and try again.
[1] "localhost"
[1] 54321
[1] FALSE
[1] 503
[1] ""
I looked at the log and this is what's displayed
11-22 10:42:12.380 127.0.0.1:54321 31865 main FATAL: On localhost/12 7.0.0.1 some of the required ports 54321, 54322 are not available, change -port PORT and try again.
But it's quite weird since before running all this I verified that the specified port were available. I'm quite desperate, hope you can help.
Thanks
update
So I managed to run. I went under
/home/datascience/.checkpoint/2018-11-20/lib/x86_64-redhat-linux-gnu/3.5.1/h2o/java
and run java -jar h2o.jar and I found instance running under port 54323.
Then i come back to R and run
h2o.init(ip='machine_ip',port=54321,max_mem_size='2g',startH2O=FALSE)
and it worked. But why?? I shutdown everything , reopen it and the only to make things work is to run java -jar h2o.jar and then go to R session and run h2o.init()
r h2o
asked Nov 22 '18 at 9:45
Marco FumagalliMarco Fumagalli
4841616
add a comment |
I m using h2o package from R on a server with CentOs 7.
I installed correctly library. Java version
java version "1.8.0_181"
Java(TM) SE Runtime Environment (build 1.8.0_181-b13)
Java HotSpot(TM) 64-Bit Server VM (build 25.181-b13, mixed mode)
Settled correctly as JAVA_HOME.
When I run h2o.init() I got this long message with error
rary: xgboost4j_gpu
11-22 10:42:12.375 127.0.0.1:54321 31865 main INFO: XGBoost supported backends: [WITH_GPU, WITH_OMP]
11-22 10:42:12.375 127.0.0.1:54321 31865 main INFO: ----- H2O started -----
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git branch: rel-wright
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git hash: 0457fda98594a72aca24d06e8c3622d45bd545d2
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git describe: jenkins-rel-latest-stable-1-g0457fda
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build project version: 3.20.0.8
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build age: 2 months
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Built by: 'jenkins'
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Built on: '2018-09-21 16:54:12'
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Watchdog Build git branch: (unknown)
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Watchdog Build git hash: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Build git describe: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Build project version: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Built by: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Built on: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git branch: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git hash: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git describe: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build project version: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: XGBoost Built by: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: XGBoost Built on: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git branch: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git hash: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git describe: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build project version: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Built by: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Built on: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: Processed H2O arguments: [-name, H2O_started_from_R_datascience_msi886, -ip, localhost, -web_ip, localhost, -port, 54321, -ice_root, /tmp/RtmpooR6rF]
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: Java availableProcessors: 4
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java heap totalMemory: 121.0 MB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java heap maxMemory: 1.73 GB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java version: Java 1.8.0_181 (from Oracle Corporation)
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: JVM launch parameters: [-Dsys.ai.h2o.debug.allowJavaVersions=11, -ea]
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: OS version: Linux 3.10.0-862.14.4.el7.x86_64 (amd64)
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Machine physical memory: 7.80 GB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: X-h2o-cluster-id: 1542879731843
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: User name: 'datascience'
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: IPv6 stack selected: false
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Possible IP Address: ens160 (ens160), fe80:0:0:0:250:56ff:feb4:1f23%ens160
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: ens160 (ens160), 10.0.1.110
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: lo (lo), 0:0:0:0:0:0:0:1%lo
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: lo (lo), 127.0.0.1
11-22 10:42:12.380 127.0.0.1:54321 31865 main FATAL: On localhost/127.0.0.1 some of the required ports 54321, 54322 are not available, change -port PORT and try again.
[1] "localhost"
[1] 54321
[1] FALSE
[1] 503
[1] ""
I looked at the log and this is what's displayed
11-22 10:42:12.380 127.0.0.1:54321 31865 main FATAL: On localhost/12 7.0.0.1 some of the required ports 54321, 54322 are not available, change -port PORT and try again.
But it's quite weird since before running all this I verified that the specified port were available. I'm quite desperate, hope you can help.
Thanks
update
So I managed to run. I went under
/home/datascience/.checkpoint/2018-11-20/lib/x86_64-redhat-linux-gnu/3.5.1/h2o/java
and run java -jar h2o.jar and I found instance running under port 54323.
Then i come back to R and run
h2o.init(ip='machine_ip',port=54321,max_mem_size='2g',startH2O=FALSE)
and it worked. But why?? I shutdown everything , reopen it and the only to make things work is to run java -jar h2o.jar and then go to R session and run h2o.init()
r h2o
asked Nov 22 '18 at 9:45
Marco FumagalliMarco Fumagalli
4841616
did you try changing the default port?
– Nutle
Nov 22 '18 at 11:07
see updated post. Thanks
– Marco Fumagalli
Nov 22 '18 at 11:08
add a comment |
I m using h2o package from R on a server with CentOs 7.
I installed correctly library. Java version
java version "1.8.0_181"
Java(TM) SE Runtime Environment (build 1.8.0_181-b13)
Java HotSpot(TM) 64-Bit Server VM (build 25.181-b13, mixed mode)
Settled correctly as JAVA_HOME.
When I run h2o.init() I got this long message with error
rary: xgboost4j_gpu
11-22 10:42:12.375 127.0.0.1:54321 31865 main INFO: XGBoost supported backends: [WITH_GPU, WITH_OMP]
11-22 10:42:12.375 127.0.0.1:54321 31865 main INFO: ----- H2O started -----
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git branch: rel-wright
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git hash: 0457fda98594a72aca24d06e8c3622d45bd545d2
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git describe: jenkins-rel-latest-stable-1-g0457fda
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build project version: 3.20.0.8
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build age: 2 months
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Built by: 'jenkins'
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Built on: '2018-09-21 16:54:12'
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Watchdog Build git branch: (unknown)
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Watchdog Build git hash: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Build git describe: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Build project version: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Built by: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Built on: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git branch: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git hash: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git describe: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build project version: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: XGBoost Built by: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: XGBoost Built on: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git branch: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git hash: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git describe: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build project version: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Built by: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Built on: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: Processed H2O arguments: [-name, H2O_started_from_R_datascience_msi886, -ip, localhost, -web_ip, localhost, -port, 54321, -ice_root, /tmp/RtmpooR6rF]
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: Java availableProcessors: 4
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java heap totalMemory: 121.0 MB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java heap maxMemory: 1.73 GB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java version: Java 1.8.0_181 (from Oracle Corporation)
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: JVM launch parameters: [-Dsys.ai.h2o.debug.allowJavaVersions=11, -ea]
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: OS version: Linux 3.10.0-862.14.4.el7.x86_64 (amd64)
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Machine physical memory: 7.80 GB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: X-h2o-cluster-id: 1542879731843
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: User name: 'datascience'
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: IPv6 stack selected: false
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Possible IP Address: ens160 (ens160), fe80:0:0:0:250:56ff:feb4:1f23%ens160
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: ens160 (ens160), 10.0.1.110
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: lo (lo), 0:0:0:0:0:0:0:1%lo
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: lo (lo), 127.0.0.1
11-22 10:42:12.380 127.0.0.1:54321 31865 main FATAL: On localhost/127.0.0.1 some of the required ports 54321, 54322 are not available, change -port PORT and try again.
[1] "localhost"
[1] 54321
[1] FALSE
[1] 503
[1] ""
I looked at the log and this is what's displayed
11-22 10:42:12.380 127.0.0.1:54321 31865 main FATAL: On localhost/12 7.0.0.1 some of the required ports 54321, 54322 are not available, change -port PORT and try again.
But it's quite weird since before running all this I verified that the specified port were available. I'm quite desperate, hope you can help.
Thanks
update
So I managed to run. I went under
/home/datascience/.checkpoint/2018-11-20/lib/x86_64-redhat-linux-gnu/3.5.1/h2o/java
and run java -jar h2o.jar and I found instance running under port 54323.
Then i come back to R and run
h2o.init(ip='machine_ip',port=54321,max_mem_size='2g',startH2O=FALSE)
and it worked. But why?? I shutdown everything , reopen it and the only to make things work is to run java -jar h2o.jar and then go to R session and run h2o.init()
r h2o
asked Nov 22 '18 at 9:45
Marco FumagalliMarco Fumagalli
4841616
I m using h2o package from R on a server with CentOs 7.
I installed correctly library. Java version
java version "1.8.0_181"
Java(TM) SE Runtime Environment (build 1.8.0_181-b13)
Java HotSpot(TM) 64-Bit Server VM (build 25.181-b13, mixed mode)
Settled correctly as JAVA_HOME.
When I run h2o.init() I got this long message with error
rary: xgboost4j_gpu
11-22 10:42:12.375 127.0.0.1:54321 31865 main INFO: XGBoost supported backends: [WITH_GPU, WITH_OMP]
11-22 10:42:12.375 127.0.0.1:54321 31865 main INFO: ----- H2O started -----
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git branch: rel-wright
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git hash: 0457fda98594a72aca24d06e8c3622d45bd545d2
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build git describe: jenkins-rel-latest-stable-1-g0457fda
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build project version: 3.20.0.8
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Build age: 2 months
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Built by: 'jenkins'
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Built on: '2018-09-21 16:54:12'
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Watchdog Build git branch: (unknown)
11-22 10:42:12.376 127.0.0.1:54321 31865 main INFO: Watchdog Build git hash: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Build git describe: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Build project version: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Built by: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: Watchdog Built on: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git branch: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git hash: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build git describe: (unknown)
11-22 10:42:12.377 127.0.0.1:54321 31865 main INFO: XGBoost Build project version: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: XGBoost Built by: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: XGBoost Built on: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git branch: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git hash: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build git describe: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Build project version: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Built by: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: KrbStandalone Built on: (unknown)
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: Processed H2O arguments: [-name, H2O_started_from_R_datascience_msi886, -ip, localhost, -web_ip, localhost, -port, 54321, -ice_root, /tmp/RtmpooR6rF]
11-22 10:42:12.378 127.0.0.1:54321 31865 main INFO: Java availableProcessors: 4
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java heap totalMemory: 121.0 MB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java heap maxMemory: 1.73 GB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Java version: Java 1.8.0_181 (from Oracle Corporation)
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: JVM launch parameters: [-Dsys.ai.h2o.debug.allowJavaVersions=11, -ea]
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: OS version: Linux 3.10.0-862.14.4.el7.x86_64 (amd64)
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Machine physical memory: 7.80 GB
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: X-h2o-cluster-id: 1542879731843
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: User name: 'datascience'
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: IPv6 stack selected: false
11-22 10:42:12.379 127.0.0.1:54321 31865 main INFO: Possible IP Address: ens160 (ens160), fe80:0:0:0:250:56ff:feb4:1f23%ens160
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: ens160 (ens160), 10.0.1.110
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: lo (lo), 0:0:0:0:0:0:0:1%lo
11-22 10:42:12.380 127.0.0.1:54321 31865 main INFO: Possible IP Address: lo (lo), 127.0.0.1
11-22 10:42:12.380 127.0.0.1:54321 31865 main FATAL: On localhost/127.0.0.1 some of the required ports 54321, 54322 are not available, change -port PORT and try again.
[1] "localhost"
[1] 54321
[1] FALSE
[1] 503
[1] ""
I looked at the log and this is what's displayed
11-22 10:42:12.380 127.0.0.1:54321 31865 main FATAL: On localhost/12 7.0.0.1 some of the required ports 54321, 54322 are not available, change -port PORT and try again.
But it's quite weird since before running all this I verified that the specified port were available. I'm quite desperate, hope you can help.
Thanks
update
So I managed to run. I went under
/home/datascience/.checkpoint/2018-11-20/lib/x86_64-redhat-linux-gnu/3.5.1/h2o/java
and run java -jar h2o.jar and I found instance running under port 54323.
Then i come back to R and run
h2o.init(ip='machine_ip',port=54321,max_mem_size='2g',startH2O=FALSE)
and it worked. But why?? I shutdown everything , reopen it and the only to make things work is to run java -jar h2o.jar and then go to R session and run h2o.init()
r h2o
r h2o
asked Nov 22 '18 at 9:45
Marco FumagalliMarco Fumagalli
4841616
asked Nov 22 '18 at 9:45
Marco FumagalliMarco Fumagalli
4841616
edited Nov 29 '18 at 13:44
Marco Fumagalli
asked Nov 22 '18 at 9:45
Marco FumagalliMarco Fumagalli
4841616
asked Nov 22 '18 at 9:45
Marco FumagalliMarco Fumagalli
4841616
asked Nov 22 '18 at 9:45
Marco FumagalliMarco Fumagalli
4841616
4841616
did you try changing the default port?
– Nutle
Nov 22 '18 at 11:07
see updated post. Thanks
– Marco Fumagalli
Nov 22 '18 at 11:08
add a comment |
did you try changing the default port?
– Nutle
Nov 22 '18 at 11:07
see updated post. Thanks
– Marco Fumagalli
Nov 22 '18 at 11:08
did you try changing the default port?
– Nutle
Nov 22 '18 at 11:07
did you try changing the default port?
– Nutle
Nov 22 '18 at 11:07
see updated post. Thanks
– Marco Fumagalli
Nov 22 '18 at 11:08
see updated post. Thanks
– Marco Fumagalli
Nov 22 '18 at 11:08
add a comment |
2 Answers
2
active
oldest
votes
h2o.init() will look for an existing h2o instance. since you started one by hand with “java -jar h2o.jar” h2o.init() found it and connected to it.
if you don’t specify an IP address, and h2o.init() does not find an h2o instance already running, then h2o.init() will try to make one if startH2O is true. the message saying that port 54321 or port 54322 is not available means exactly that. one of them must have been taken even if it’s not what you intended. Use “netstat -anp” to diagnose port usage on linux.
answered Nov 22 '18 at 21:38
TomKraljevicTomKraljevic
2,447713
I assure you that first thing I did was to check which ports were available, even before running "java -jar h2o.jar"
– Marco Fumagalli
Nov 23 '18 at 8:32
add a comment |
Ok I found a solution with a software engineer working in my company.
He simply wrote a bash which will call "java -jar h2o.jar" that manually start h2o cluster and inside R script I connect to the existing h2o instance through
h2o.init(ip="machine_ip",port=number_port,startH2O=FALSE)
answered Nov 24 '18 at 12:43
Marco FumagalliMarco Fumagalli
4841616
add a comment |
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2 Answers
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2 Answers
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oldest
votes
h2o.init() will look for an existing h2o instance. since you started one by hand with “java -jar h2o.jar” h2o.init() found it and connected to it.
if you don’t specify an IP address, and h2o.init() does not find an h2o instance already running, then h2o.init() will try to make one if startH2O is true. the message saying that port 54321 or port 54322 is not available means exactly that. one of them must have been taken even if it’s not what you intended. Use “netstat -anp” to diagnose port usage on linux.
answered Nov 22 '18 at 21:38
TomKraljevicTomKraljevic
2,447713
I assure you that first thing I did was to check which ports were available, even before running "java -jar h2o.jar"
– Marco Fumagalli
Nov 23 '18 at 8:32
add a comment |
h2o.init() will look for an existing h2o instance. since you started one by hand with “java -jar h2o.jar” h2o.init() found it and connected to it.
if you don’t specify an IP address, and h2o.init() does not find an h2o instance already running, then h2o.init() will try to make one if startH2O is true. the message saying that port 54321 or port 54322 is not available means exactly that. one of them must have been taken even if it’s not what you intended. Use “netstat -anp” to diagnose port usage on linux.
answered Nov 22 '18 at 21:38
TomKraljevicTomKraljevic
2,447713
I assure you that first thing I did was to check which ports were available, even before running "java -jar h2o.jar"
– Marco Fumagalli
Nov 23 '18 at 8:32
add a comment |
h2o.init() will look for an existing h2o instance. since you started one by hand with “java -jar h2o.jar” h2o.init() found it and connected to it.
if you don’t specify an IP address, and h2o.init() does not find an h2o instance already running, then h2o.init() will try to make one if startH2O is true. the message saying that port 54321 or port 54322 is not available means exactly that. one of them must have been taken even if it’s not what you intended. Use “netstat -anp” to diagnose port usage on linux.
answered Nov 22 '18 at 21:38
TomKraljevicTomKraljevic
2,447713
h2o.init() will look for an existing h2o instance. since you started one by hand with “java -jar h2o.jar” h2o.init() found it and connected to it.
if you don’t specify an IP address, and h2o.init() does not find an h2o instance already running, then h2o.init() will try to make one if startH2O is true. the message saying that port 54321 or port 54322 is not available means exactly that. one of them must have been taken even if it’s not what you intended. Use “netstat -anp” to diagnose port usage on linux.
answered Nov 22 '18 at 21:38
TomKraljevicTomKraljevic
2,447713
answered Nov 22 '18 at 21:38
TomKraljevicTomKraljevic
2,447713
answered Nov 22 '18 at 21:38
TomKraljevicTomKraljevic
2,447713
answered Nov 22 '18 at 21:38
TomKraljevicTomKraljevic
2,447713
2,447713
I assure you that first thing I did was to check which ports were available, even before running "java -jar h2o.jar"
– Marco Fumagalli
Nov 23 '18 at 8:32
add a comment |
I assure you that first thing I did was to check which ports were available, even before running "java -jar h2o.jar"
– Marco Fumagalli
Nov 23 '18 at 8:32
I assure you that first thing I did was to check which ports were available, even before running "java -jar h2o.jar"
– Marco Fumagalli
Nov 23 '18 at 8:32
I assure you that first thing I did was to check which ports were available, even before running "java -jar h2o.jar"
– Marco Fumagalli
Nov 23 '18 at 8:32
add a comment |
Ok I found a solution with a software engineer working in my company.
He simply wrote a bash which will call "java -jar h2o.jar" that manually start h2o cluster and inside R script I connect to the existing h2o instance through
h2o.init(ip="machine_ip",port=number_port,startH2O=FALSE)
answered Nov 24 '18 at 12:43
Marco FumagalliMarco Fumagalli
4841616
add a comment |
Ok I found a solution with a software engineer working in my company.
He simply wrote a bash which will call "java -jar h2o.jar" that manually start h2o cluster and inside R script I connect to the existing h2o instance through
h2o.init(ip="machine_ip",port=number_port,startH2O=FALSE)
answered Nov 24 '18 at 12:43
Marco FumagalliMarco Fumagalli
4841616
add a comment |
Ok I found a solution with a software engineer working in my company.
He simply wrote a bash which will call "java -jar h2o.jar" that manually start h2o cluster and inside R script I connect to the existing h2o instance through
h2o.init(ip="machine_ip",port=number_port,startH2O=FALSE)
answered Nov 24 '18 at 12:43
Marco FumagalliMarco Fumagalli
4841616
Ok I found a solution with a software engineer working in my company.
He simply wrote a bash which will call "java -jar h2o.jar" that manually start h2o cluster and inside R script I connect to the existing h2o instance through
h2o.init(ip="machine_ip",port=number_port,startH2O=FALSE)
answered Nov 24 '18 at 12:43
Marco FumagalliMarco Fumagalli
4841616
answered Nov 24 '18 at 12:43
Marco FumagalliMarco Fumagalli
4841616
answered Nov 24 '18 at 12:43
Marco FumagalliMarco Fumagalli
4841616
answered Nov 24 '18 at 12:43
Marco FumagalliMarco Fumagalli
4841616
4841616
add a comment |
add a comment |
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did you try changing the default port?
– Nutle
Nov 22 '18 at 11:07
see updated post. Thanks
– Marco Fumagalli
Nov 22 '18 at 11:08