escape=F kable pdf not compiling












1















I am trying to include m\textsubscript{2} in a column name using kable. When I change escape=F to allow this to occur the PDF fails to compile.



Code:



library(kableExtra)
kable(table2.1,format="latex",row.names=NA,align="c",escape=T,
col.names=c("Survey","StationID","Latitude (degrees)",
"Latitude (minutes)","Longitude (degrees)","Longitude (minutes)","Scallops (number)","Scallops (lbs)","Scallops (baskets)","Scallop density (m\textsubscript{2})","Nematode Prevalence (%)"),caption="Catch data for the commercial dredge from the VIMS/Industry cooperative surveys completed during May-July 2018. Nematode prevalence (percentage of scallops sampled at a given station infected with nematodes) is also provided for each station.",longtable = T) %>%

kable_styling(font_size=8,position="center",latex_options =c("repeat_header", "hold_position"),repeat_header_text="Table 2 continued",repeat_header_method="replace") %>%

column_spec(3:6,width = "0.50in") %>%
column_spec(7:9,width = "0.49in") %>%
column_spec(10:11,width = "0.65in")


I can get a PDF to compile with the superscript format using the following code using a fake small dataset:



A <- data.frame(round(replicate(11, runif(2)),2))

rownames(A) <- c("Hola\textsubscript{123}", "Hola\textsubscript{234}")

kable(A,
row.names = T,
col.names=c("Survey","StationID","Latitude (degrees)",
"Latitude (minutes)","Longitude (degrees)","Longitude (minutes)","Scallops (number)","Scallops (lbs)","Scallops (baskets)","Scallop density (m\textsuperscript{2})","Nematode Prevalence"),escape = F)%>%

kable_styling(font_size=8,position="center",latex_options =c("repeat_header", "hold_position"),repeat_header_text="Table 2 continued",repeat_header_method="replace") %>%

column_spec(3:6,width = "0.25in") %>%
column_spec(7:9,width = "0.25in") %>%
column_spec(10:11,width = "0.65in")
@


My data table2.1 is generated from R source code. The structure is:



data.frame':    770 obs. of  11 variables:
$ Survey : Factor w/ 3 levels "CAI_II","MAB",..: 2 2 2 2 2 2 2 2 2 2 ...
$ StationID : int 201801001 201801002 201801003 201801004 201801005 201801006 201801007 201801008 201801009 201801010 ...
$ Latitude_degrees : int 36 36 36 36 36 36 36 36 36 36 ...
$ Latitude_minutes : num 31 36.1 36.9 41.1 42.1 ...
$ Longitude_degrees: int 74 74 74 74 74 74 74 74 74 74 ...
$ Longitude_minutes: num 48.9 44.5 46.6 48.8 45.4 ...
$ Scallop_number : num 0 0 0 0 0 0 0 0 0 0 ...
$ Scallop_lbs : num 0 0 0 0 0 0 0 0 0 0 ...
$ Scallops_baskets : num 0 0 0 0 0 0 0 0 0 0 ...
$ Scallop_density : num 0 0 0 0 0 0 0 0 0 0 ...
$ Nematode : num 0 0 0 0 0 0 0 0 0 0


When I try to run the example code I got to work with table2.1, the PDF also fails to compile when escape=F. This leads me to think there is something in table2.1 that is preventing the PDF from compiling, but I'm not sure and looking for advice. I am suing RStudio and pdfLaTex.










share|improve this question





























    1















    I am trying to include m\textsubscript{2} in a column name using kable. When I change escape=F to allow this to occur the PDF fails to compile.



    Code:



    library(kableExtra)
    kable(table2.1,format="latex",row.names=NA,align="c",escape=T,
    col.names=c("Survey","StationID","Latitude (degrees)",
    "Latitude (minutes)","Longitude (degrees)","Longitude (minutes)","Scallops (number)","Scallops (lbs)","Scallops (baskets)","Scallop density (m\textsubscript{2})","Nematode Prevalence (%)"),caption="Catch data for the commercial dredge from the VIMS/Industry cooperative surveys completed during May-July 2018. Nematode prevalence (percentage of scallops sampled at a given station infected with nematodes) is also provided for each station.",longtable = T) %>%

    kable_styling(font_size=8,position="center",latex_options =c("repeat_header", "hold_position"),repeat_header_text="Table 2 continued",repeat_header_method="replace") %>%

    column_spec(3:6,width = "0.50in") %>%
    column_spec(7:9,width = "0.49in") %>%
    column_spec(10:11,width = "0.65in")


    I can get a PDF to compile with the superscript format using the following code using a fake small dataset:



    A <- data.frame(round(replicate(11, runif(2)),2))

    rownames(A) <- c("Hola\textsubscript{123}", "Hola\textsubscript{234}")

    kable(A,
    row.names = T,
    col.names=c("Survey","StationID","Latitude (degrees)",
    "Latitude (minutes)","Longitude (degrees)","Longitude (minutes)","Scallops (number)","Scallops (lbs)","Scallops (baskets)","Scallop density (m\textsuperscript{2})","Nematode Prevalence"),escape = F)%>%

    kable_styling(font_size=8,position="center",latex_options =c("repeat_header", "hold_position"),repeat_header_text="Table 2 continued",repeat_header_method="replace") %>%

    column_spec(3:6,width = "0.25in") %>%
    column_spec(7:9,width = "0.25in") %>%
    column_spec(10:11,width = "0.65in")
    @


    My data table2.1 is generated from R source code. The structure is:



    data.frame':    770 obs. of  11 variables:
    $ Survey : Factor w/ 3 levels "CAI_II","MAB",..: 2 2 2 2 2 2 2 2 2 2 ...
    $ StationID : int 201801001 201801002 201801003 201801004 201801005 201801006 201801007 201801008 201801009 201801010 ...
    $ Latitude_degrees : int 36 36 36 36 36 36 36 36 36 36 ...
    $ Latitude_minutes : num 31 36.1 36.9 41.1 42.1 ...
    $ Longitude_degrees: int 74 74 74 74 74 74 74 74 74 74 ...
    $ Longitude_minutes: num 48.9 44.5 46.6 48.8 45.4 ...
    $ Scallop_number : num 0 0 0 0 0 0 0 0 0 0 ...
    $ Scallop_lbs : num 0 0 0 0 0 0 0 0 0 0 ...
    $ Scallops_baskets : num 0 0 0 0 0 0 0 0 0 0 ...
    $ Scallop_density : num 0 0 0 0 0 0 0 0 0 0 ...
    $ Nematode : num 0 0 0 0 0 0 0 0 0 0


    When I try to run the example code I got to work with table2.1, the PDF also fails to compile when escape=F. This leads me to think there is something in table2.1 that is preventing the PDF from compiling, but I'm not sure and looking for advice. I am suing RStudio and pdfLaTex.










    share|improve this question



























      1












      1








      1








      I am trying to include m\textsubscript{2} in a column name using kable. When I change escape=F to allow this to occur the PDF fails to compile.



      Code:



      library(kableExtra)
      kable(table2.1,format="latex",row.names=NA,align="c",escape=T,
      col.names=c("Survey","StationID","Latitude (degrees)",
      "Latitude (minutes)","Longitude (degrees)","Longitude (minutes)","Scallops (number)","Scallops (lbs)","Scallops (baskets)","Scallop density (m\textsubscript{2})","Nematode Prevalence (%)"),caption="Catch data for the commercial dredge from the VIMS/Industry cooperative surveys completed during May-July 2018. Nematode prevalence (percentage of scallops sampled at a given station infected with nematodes) is also provided for each station.",longtable = T) %>%

      kable_styling(font_size=8,position="center",latex_options =c("repeat_header", "hold_position"),repeat_header_text="Table 2 continued",repeat_header_method="replace") %>%

      column_spec(3:6,width = "0.50in") %>%
      column_spec(7:9,width = "0.49in") %>%
      column_spec(10:11,width = "0.65in")


      I can get a PDF to compile with the superscript format using the following code using a fake small dataset:



      A <- data.frame(round(replicate(11, runif(2)),2))

      rownames(A) <- c("Hola\textsubscript{123}", "Hola\textsubscript{234}")

      kable(A,
      row.names = T,
      col.names=c("Survey","StationID","Latitude (degrees)",
      "Latitude (minutes)","Longitude (degrees)","Longitude (minutes)","Scallops (number)","Scallops (lbs)","Scallops (baskets)","Scallop density (m\textsuperscript{2})","Nematode Prevalence"),escape = F)%>%

      kable_styling(font_size=8,position="center",latex_options =c("repeat_header", "hold_position"),repeat_header_text="Table 2 continued",repeat_header_method="replace") %>%

      column_spec(3:6,width = "0.25in") %>%
      column_spec(7:9,width = "0.25in") %>%
      column_spec(10:11,width = "0.65in")
      @


      My data table2.1 is generated from R source code. The structure is:



      data.frame':    770 obs. of  11 variables:
      $ Survey : Factor w/ 3 levels "CAI_II","MAB",..: 2 2 2 2 2 2 2 2 2 2 ...
      $ StationID : int 201801001 201801002 201801003 201801004 201801005 201801006 201801007 201801008 201801009 201801010 ...
      $ Latitude_degrees : int 36 36 36 36 36 36 36 36 36 36 ...
      $ Latitude_minutes : num 31 36.1 36.9 41.1 42.1 ...
      $ Longitude_degrees: int 74 74 74 74 74 74 74 74 74 74 ...
      $ Longitude_minutes: num 48.9 44.5 46.6 48.8 45.4 ...
      $ Scallop_number : num 0 0 0 0 0 0 0 0 0 0 ...
      $ Scallop_lbs : num 0 0 0 0 0 0 0 0 0 0 ...
      $ Scallops_baskets : num 0 0 0 0 0 0 0 0 0 0 ...
      $ Scallop_density : num 0 0 0 0 0 0 0 0 0 0 ...
      $ Nematode : num 0 0 0 0 0 0 0 0 0 0


      When I try to run the example code I got to work with table2.1, the PDF also fails to compile when escape=F. This leads me to think there is something in table2.1 that is preventing the PDF from compiling, but I'm not sure and looking for advice. I am suing RStudio and pdfLaTex.










      share|improve this question
















      I am trying to include m\textsubscript{2} in a column name using kable. When I change escape=F to allow this to occur the PDF fails to compile.



      Code:



      library(kableExtra)
      kable(table2.1,format="latex",row.names=NA,align="c",escape=T,
      col.names=c("Survey","StationID","Latitude (degrees)",
      "Latitude (minutes)","Longitude (degrees)","Longitude (minutes)","Scallops (number)","Scallops (lbs)","Scallops (baskets)","Scallop density (m\textsubscript{2})","Nematode Prevalence (%)"),caption="Catch data for the commercial dredge from the VIMS/Industry cooperative surveys completed during May-July 2018. Nematode prevalence (percentage of scallops sampled at a given station infected with nematodes) is also provided for each station.",longtable = T) %>%

      kable_styling(font_size=8,position="center",latex_options =c("repeat_header", "hold_position"),repeat_header_text="Table 2 continued",repeat_header_method="replace") %>%

      column_spec(3:6,width = "0.50in") %>%
      column_spec(7:9,width = "0.49in") %>%
      column_spec(10:11,width = "0.65in")


      I can get a PDF to compile with the superscript format using the following code using a fake small dataset:



      A <- data.frame(round(replicate(11, runif(2)),2))

      rownames(A) <- c("Hola\textsubscript{123}", "Hola\textsubscript{234}")

      kable(A,
      row.names = T,
      col.names=c("Survey","StationID","Latitude (degrees)",
      "Latitude (minutes)","Longitude (degrees)","Longitude (minutes)","Scallops (number)","Scallops (lbs)","Scallops (baskets)","Scallop density (m\textsuperscript{2})","Nematode Prevalence"),escape = F)%>%

      kable_styling(font_size=8,position="center",latex_options =c("repeat_header", "hold_position"),repeat_header_text="Table 2 continued",repeat_header_method="replace") %>%

      column_spec(3:6,width = "0.25in") %>%
      column_spec(7:9,width = "0.25in") %>%
      column_spec(10:11,width = "0.65in")
      @


      My data table2.1 is generated from R source code. The structure is:



      data.frame':    770 obs. of  11 variables:
      $ Survey : Factor w/ 3 levels "CAI_II","MAB",..: 2 2 2 2 2 2 2 2 2 2 ...
      $ StationID : int 201801001 201801002 201801003 201801004 201801005 201801006 201801007 201801008 201801009 201801010 ...
      $ Latitude_degrees : int 36 36 36 36 36 36 36 36 36 36 ...
      $ Latitude_minutes : num 31 36.1 36.9 41.1 42.1 ...
      $ Longitude_degrees: int 74 74 74 74 74 74 74 74 74 74 ...
      $ Longitude_minutes: num 48.9 44.5 46.6 48.8 45.4 ...
      $ Scallop_number : num 0 0 0 0 0 0 0 0 0 0 ...
      $ Scallop_lbs : num 0 0 0 0 0 0 0 0 0 0 ...
      $ Scallops_baskets : num 0 0 0 0 0 0 0 0 0 0 ...
      $ Scallop_density : num 0 0 0 0 0 0 0 0 0 0 ...
      $ Nematode : num 0 0 0 0 0 0 0 0 0 0


      When I try to run the example code I got to work with table2.1, the PDF also fails to compile when escape=F. This leads me to think there is something in table2.1 that is preventing the PDF from compiling, but I'm not sure and looking for advice. I am suing RStudio and pdfLaTex.







      tables knitr






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      share|improve this question




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      edited Mar 6 at 9:21









      JouleV

      5,30121242




      5,30121242










      asked Mar 5 at 18:47









      user41509user41509

      1253




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